   **If SUMMARY.md does NOT exist after a reasonable wait:** The agent may still be
   running or may have failed silently. Check `git log --oneline -5` for recent
   activity. If commits are still appearing, wait longer. If no activity, report
   the plan as failed and route to the failure handler in step 6.

   **Configurable stall surveillance (#3212):** Every `${EXECUTOR_STALL_INTERVAL_MINUTES}`
   minutes while waiting, inspect `git log "${EXPECTED_BRANCH}" --since="${DISPATCH_TS}"`
   for activity. If no completion signal, no SUMMARY.md, and no expected-branch
   commits appear for `${EXECUTOR_STALL_THRESHOLD_MINUTES}` minutes, pause and
   ask for one recovery path: `continue waiting`, `kill and retry`, or
   `kill and switch to inline execution`.

   **This fallback applies automatically to all runtimes.** Claude Code's Agent() normally
   returns synchronously, but the fallback ensures resilience if it doesn't.

5. **Post-wave hook validation (parallel mode only):** Hooks run on every executor commit by default (#2924); this post-wave run only fires when `workflow.worktree_skip_hooks=true` opted out of per-commit hooks:
   ```bash
   SKIP_HOOKS=$(gsd-sdk query config-get workflow.worktree_skip_hooks 2>/dev/null || echo "false")
   if [ "$SKIP_HOOKS" = "true" ]; then
     # Stash uncommitted changes under a named ref so we always pop (bare `git stash` strands them on hook/script failure). #3542: `refs/stash` is shared across worktrees, so this helper runs ONLY in the orchestrator's main checkout after all wave worktrees have been merged + removed; executors are forbidden from running any `git stash` subcommand (see `<destructive_git_prohibition>` in `agents/gsd-executor.md`).
     STASHED=false
     if (! git diff --quiet || ! git diff --cached --quiet) && git stash push -u -m "gsd-post-wave-hook-$$" >/dev/null 2>&1; then STASHED=true; fi
     git hook run pre-commit 2>&1 || echo "⚠ Pre-commit hooks failed — review before continuing"
     [ "$STASHED" = "true" ] && (git stash pop >/dev/null 2>&1 || echo "⚠ Could not pop gsd-post-wave-hook stash — recover manually")
   fi
   ```
   If hooks fail: report the failure and ask "Fix hook issues now?" or "Continue to next wave?"

5.5. **Worktree cleanup (when `isolation="worktree"` was used):**

   **Standard wave contract:** Each wave's worktrees merge to main via the templated path below before the next wave's worktrees fork. The cleanup loop runs once per wave at the end of the wave lifecycle. Worktrees created in wave N must be fully removed before wave N+1 forks new ones.

   **Cross-wave dependency deviation (supported execution mode):** When the orchestrator legitimately deviates from the standard wave model — for example, a phase with cross-wave plan dependencies that requires custom inter-worktree base-update merges (e.g., `merge: bring 09-01 + 09-02 into 09-03 base`) — the cleanup loop below is NOT automatically re-entered for those custom merges. The deviation path produces correct final history but bypasses this loop, leaving `worktree-agent-*` directories in place. Use the **cleanup-tail snippet** below to remove any residual worktrees after such a deviation.

   When executor agents ran in worktree isolation, their commits land on temporary branches in separate working trees. After the wave completes, merge these changes back and clean up:

   **Manifest source of truth (#3384):** Cleanup consumes the `WAVE_WORKTREE_MANIFEST` created and populated during executor dispatch in step 3. Do not recreate or truncate it here.

   Prefer the bounded helper, which validates branch identity, expected base, deletion
   diffs, merge result, and worktree removal before deleting the temporary branch.
   If the helper reports a blocked cleanup, resolve the reported manifest entry and
   rerun the same command. Do not fall back to broad worktree discovery.

   ```bash
   [ -n "${WAVE_WORKTREE_MANIFEST:-}" ] && [ -f "$WAVE_WORKTREE_MANIFEST" ] || {
     echo "BLOCKED: missing WAVE_WORKTREE_MANIFEST; refusing broad worktree cleanup (#3384)." >&2
     exit 1
   }

   # Guard: pin cleanup back to the primary worktree and fail on branch drift (#3174).
   PRIMARY_WT=$(git worktree list --porcelain | awk '/^worktree /{print substr($0,10); exit}')
   if [ -z "$PRIMARY_WT" ]; then
     echo "FATAL: could not resolve primary worktree before cleanup" >&2
     exit 1
   fi
   if [ -n "$PRIMARY_WT" ] && [ "$(pwd -P 2>/dev/null)" != "$(cd "$PRIMARY_WT" 2>/dev/null && pwd -P)" ]; then echo "⚠ Orchestrator CWD drifted to $(pwd) — pinning to $PRIMARY_WT before worktree cleanup (#3174)"; cd "$PRIMARY_WT" || { echo "FATAL: cannot cd to primary worktree $PRIMARY_WT" >&2; exit 1; }; fi
   ORCH_BRANCH=$(git rev-parse --abbrev-ref HEAD)
   [ -z "${EXPECTED_BRANCH:-}" ] || [ "$ORCH_BRANCH" = "$EXPECTED_BRANCH" ] || { echo "FATAL: orchestrator on '$ORCH_BRANCH' but expected '$EXPECTED_BRANCH' before worktree cleanup — refusing to merge (#3174-class drift)" >&2; exit 1; }

   if command -v gsd-sdk >/dev/null 2>&1; then
     gsd-sdk query worktree.cleanup-wave --manifest "$WAVE_WORKTREE_MANIFEST" || exit 1
   else
     echo "WARN: gsd-sdk unavailable; using manifest-scoped shell fallback (#3384)." >&2
   WT_PATHS_FILE=$(mktemp "${TMPDIR:-/tmp}/gsd-worktree-paths-XXXXXX")
   node -e 'const fs=require("fs");const p=process.env.WAVE_WORKTREE_MANIFEST;try{if(!p)throw new Error("WAVE_WORKTREE_MANIFEST is unset");if(!fs.existsSync(p))throw new Error("manifest does not exist");const s=fs.readFileSync(p,"utf8");if(!s.trim())throw new Error("manifest is empty");const j=JSON.parse(s);for(const w of j.worktrees||[])if(w.worktree_path)console.log(w.worktree_path)}catch(e){console.error(`ERROR: cannot read worktree manifest ${p||"(unset)"}: ${e.message}`);process.exit(1)}' > "$WT_PATHS_FILE" || { echo "BLOCKED: cannot read WAVE_WORKTREE_MANIFEST; refusing cleanup (#3384)." >&2; exit 1; }
   while IFS= read -r WT; do
     [ -z "$WT" ] && continue
     WT_BRANCH=$(git -C "$WT" rev-parse --abbrev-ref HEAD 2>/dev/null)
     if [ -n "$WT_BRANCH" ] && [ "$WT_BRANCH" != "HEAD" ]; then
       CURRENT_BRANCH=$(git rev-parse --abbrev-ref HEAD)
       STATE_BACKUP=$(mktemp)
       ROADMAP_BACKUP=$(mktemp)
       [ -f .planning/STATE.md ] && cp .planning/STATE.md "$STATE_BACKUP" || true
       [ -f .planning/ROADMAP.md ] && cp .planning/ROADMAP.md "$ROADMAP_BACKUP" || true
       DELETIONS=$(git diff --diff-filter=D --name-only HEAD..."$WT_BRANCH" 2>/dev/null || true)
       if [ -n "$DELETIONS" ]; then
         echo "BLOCKED: Worktree branch $WT_BRANCH contains file deletions: $DELETIONS"
         echo "Review these deletions before merging. If intentional, remove this guard and re-run."
         rm -f "$STATE_BACKUP" "$ROADMAP_BACKUP"
         continue
       fi
       git merge "$WT_BRANCH" --no-ff --no-edit -m "chore: merge executor worktree ($WT_BRANCH)" 2>&1 || {
         echo "⚠ Merge conflict from worktree $WT_BRANCH — resolve manually"
         echo "  STATE.md backup:   $STATE_BACKUP"
         echo "  ROADMAP.md backup: $ROADMAP_BACKUP"
         echo "  Restore with: cp \$STATE_BACKUP .planning/STATE.md && cp \$ROADMAP_BACKUP .planning/ROADMAP.md"
         break
       }
       MERGE_DEL_COUNT=$(git diff --diff-filter=D --name-only HEAD~1 HEAD 2>/dev/null | grep -vc '^\.planning/' || true)
       if [ "$MERGE_DEL_COUNT" -gt 5 ] && [ "${ALLOW_BULK_DELETE:-0}" != "1" ]; then
         MERGE_DELETIONS=$(git diff --diff-filter=D --name-only HEAD~1 HEAD 2>/dev/null | grep -v '^\.planning/' || true)
         echo "⚠ BLOCKED: Merge of $WT_BRANCH deleted $MERGE_DEL_COUNT files outside .planning/ — reverting to protect repository integrity (#2384)"
         echo "$MERGE_DELETIONS"
         echo "  If these deletions are intentional, re-run with ALLOW_BULK_DELETE=1"
         git reset --hard HEAD~1 2>/dev/null || true
         rm -f "$STATE_BACKUP" "$ROADMAP_BACKUP"
         continue
       fi
       if [ -s "$STATE_BACKUP" ]; then
         cp "$STATE_BACKUP" .planning/STATE.md
       fi
       if [ -s "$ROADMAP_BACKUP" ]; then
         cp "$ROADMAP_BACKUP" .planning/ROADMAP.md
       fi
       rm -f "$STATE_BACKUP" "$ROADMAP_BACKUP"
       # Detect files deleted on main but re-added by worktree merge (#2501).
       DELETED_FILES=$(git diff --diff-filter=A --name-only HEAD~1 -- .planning/ 2>/dev/null || true)
       for RESURRECTED in $DELETED_FILES; do
         WAS_DELETED=$(git log --follow --diff-filter=D --name-only --format="" HEAD~1 -- "$RESURRECTED" 2>/dev/null | grep -c . || true)
         if [ "${WAS_DELETED:-0}" -gt 0 ]; then
           git rm -f "$RESURRECTED" 2>/dev/null || true
         fi
       done
       if ! git diff --quiet .planning/STATE.md .planning/ROADMAP.md 2>/dev/null || \
          [ -n "$DELETED_FILES" ]; then
         COMMIT_DOCS=$(gsd-sdk query config-get commit_docs 2>/dev/null || echo "true")
         if [ "$COMMIT_DOCS" != "false" ]; then
           git add .planning/STATE.md .planning/ROADMAP.md 2>/dev/null || true
           git commit --amend --no-edit 2>/dev/null || true
         fi
       fi
       # Safety net: rescue uncommitted SUMMARY.md before worktree removal (#2070, #2838).
       while IFS= read -r SUMMARY; do
         [ -z "$SUMMARY" ] && continue
         REL_PATH="${SUMMARY#$WT/}"
         if [ ! -f "$REL_PATH" ] || ! cmp -s "$SUMMARY" "$REL_PATH"; then
           mkdir -p "$(dirname "$REL_PATH")"
           cp "$SUMMARY" "$REL_PATH"
           echo "⚠ Rescued $REL_PATH from worktree before removal"
         fi
       done < <(find "$WT/.planning" -name "*SUMMARY.md" 2>/dev/null)
       REMOVE_OK=false
       if git worktree remove "$WT" --force; then
         REMOVE_OK=true
       else
         WT_NAME=$(basename "$WT")
         if [ -f ".git/worktrees/${WT_NAME}/locked" ]; then
           echo "⚠ Worktree $WT is locked — attempting to unlock and retry"
           git worktree unlock "$WT" 2>/dev/null || true
           if git worktree remove "$WT" --force; then
             REMOVE_OK=true
           else
             echo "⚠ Residual worktree at $WT — manual cleanup required after session exits:"
             echo "    git worktree unlock \"$WT\" && git worktree remove \"$WT\" --force && git branch -D \"$WT_BRANCH\""
           fi
         else
           echo "⚠ Residual worktree at $WT (remove failed) — investigate manually"
         fi
       fi
       if [ "$REMOVE_OK" = "true" ]; then
         git branch -D "$WT_BRANCH" 2>/dev/null || true
       else
         echo "⚠ Keeping branch $WT_BRANCH because worktree removal failed (#3384)"
       fi
     fi
   done < "$WT_PATHS_FILE"
   fi
   ```

   **Cleanup-tail snippet (use after any wave whose merges did not flow through the templated path above):**

   If the orchestrator deviated from the standard wave merge path (e.g., custom inter-worktree base-update merges with `merge: bring …` style messages), run this snippet after the custom merges are complete. It reads only `WAVE_WORKTREE_MANIFEST`; do not discover unrelated `worktree-agent-*` worktrees.

   ```bash
   # Cleanup-tail: pin orchestrator CWD to primary worktree before cleanup-tail (#3174).
   PRIMARY_WT=$(git worktree list --porcelain | awk '/^worktree /{print substr($0,10); exit}')
   if [ -n "$PRIMARY_WT" ] && [ "$(pwd -P 2>/dev/null)" != "$(cd "$PRIMARY_WT" 2>/dev/null && pwd -P)" ]; then echo "⚠ Orchestrator CWD drifted to $(pwd) — pinning to $PRIMARY_WT before cleanup-tail (#3174)"; cd "$PRIMARY_WT" || { echo "FATAL: cannot cd to primary worktree $PRIMARY_WT" >&2; exit 1; }; fi
   # Cleanup-tail: remove residual agent worktrees after a cross-wave-dependency deviation.
   # Uses only the current wave manifest to avoid touching unrelated active agents (#3384).
   WT_PATHS_FILE=$(mktemp "${TMPDIR:-/tmp}/gsd-worktree-paths-XXXXXX")
   node -e 'const fs=require("fs");const p=process.env.WAVE_WORKTREE_MANIFEST;try{if(!p)throw new Error("WAVE_WORKTREE_MANIFEST is unset");if(!fs.existsSync(p))throw new Error("manifest does not exist");const s=fs.readFileSync(p,"utf8");if(!s.trim())throw new Error("manifest is empty");const j=JSON.parse(s);for(const w of j.worktrees||[])if(w.worktree_path)console.log(w.worktree_path)}catch(e){console.error(`ERROR: cannot read worktree manifest ${p||"(unset)"}: ${e.message}`);process.exit(1)}' > "$WT_PATHS_FILE" || { echo "BLOCKED: cannot read WAVE_WORKTREE_MANIFEST; refusing cleanup (#3384)." >&2; exit 1; }
   while IFS= read -r WT; do
     [ -z "$WT" ] && continue
     WT_BRANCH=$(git -C "$WT" rev-parse --abbrev-ref HEAD 2>/dev/null)
     [ -z "$WT_BRANCH" ] || [ "$WT_BRANCH" = "HEAD" ] && continue
     echo "Cleaning up residual worktree: $WT (branch: $WT_BRANCH)"
     git worktree unlock "$WT" 2>/dev/null || true
     if ! git worktree remove "$WT" --force; then
       WT_NAME=$(basename "$WT")
       if [ -f ".git/worktrees/${WT_NAME}/locked" ]; then
         echo "⚠ Worktree $WT is locked — unlock failed; manual cleanup required:"
         echo "    git worktree unlock \"$WT\" && git worktree remove \"$WT\" --force && git branch -D \"$WT_BRANCH\""
       else
         echo "⚠ Residual worktree at $WT — remove failed; manual cleanup required"
       fi
     else
       git branch -D "$WT_BRANCH" 2>/dev/null || true
     fi
   done < "$WT_PATHS_FILE"
   git worktree prune
   ```

   **When to skip step 5.5:**

   **If no plan in this wave used worktree isolation** (project-level `USE_WORKTREES=false` OR every plan in the wave had `USE_WORKTREES_FOR_PLAN=false` — i.e. `WAVE_WORKTREE_PLANS` from step 2.5 is empty): all agents ran on the main working tree — skip this step entirely.

   **If the orchestrator merged via custom messages (cross-wave-dependency deviation):** the templated cleanup loop above was not triggered for those merges. Run the cleanup-tail snippet above instead. After the snippet completes, proceed to step 5.6.

   **If at least one plan used worktrees but others did not:** still run this cleanup — it iterates over actual `git worktree list` output and only merges back the worktrees that were created, leaving sequential plans' commits on the main tree untouched.

   **If no worktrees found at runtime:** Skip silently — agents may have been spawned without worktree isolation, or the orchestrator already cleaned them up.

5.6. **Post-merge build & test gate:**

   After merging all worktrees in a wave (parallel mode), or after the last plan completes
   (serial mode), run a build and then the project's test suite to catch cross-plan
   integration issues that individual worktree self-checks cannot detect (e.g., conflicting
   type definitions, removed exports, import changes, link errors).

   This addresses the Generator self-evaluation blind spot identified in Anthropic's
   harness engineering research: agents reliably report Self-Check: PASSED even when
   merging their work creates failures.

   Read and execute `get-shit-done/workflows/execute-phase/steps/post-merge-gate.md`.

5.7. **Post-wave shared artifact update (when at least one plan used worktrees, skip if tests failed):**

   When **any** executor agent in this wave ran with `isolation="worktree"`, that agent skipped STATE.md and ROADMAP.md updates to avoid last-merge-wins overwrites. The orchestrator is the single writer for these files. After worktrees are merged back, update shared artifacts once for every completed plan in the wave (worktree-mode plans **and** sequential plans that ran on the main tree but deferred to the orchestrator for tracking writes).

   **Only update tracking when tests passed (TEST_EXIT=0).**
   If tests failed or timed out, skip the tracking update — plans should
   not be marked as complete when integration tests are failing or inconclusive.

   ```bash
   # Guard: only update tracking if post-merge tests passed
   # Timeout (124) is treated as inconclusive — do NOT mark plans complete
   if [ "${TEST_EXIT}" -eq 0 ]; then
     # Update ROADMAP plan progress for each completed plan in this wave
     for plan_id in {completed_plan_ids}; do
       gsd-sdk query roadmap.update-plan-progress "${PHASE_NUMBER}" "${plan_id}" "complete"
     done

     # Only commit tracking files if they actually changed
     if ! git diff --quiet .planning/ROADMAP.md .planning/STATE.md 2>/dev/null; then
       gsd-sdk query commit "docs(phase-${PHASE_NUMBER}): update tracking after wave ${N}" --files .planning/ROADMAP.md .planning/STATE.md
     fi
   elif [ "${TEST_EXIT}" -eq 124 ]; then
     echo "⚠ Skipping tracking update — test suite timed out. Plans remain in-progress. Run tests manually to confirm."
   else
     echo "⚠ Skipping tracking update — post-merge tests failed (exit ${TEST_EXIT}). Plans remain in-progress until tests pass."
   fi
   ```

   Where `WAVE_PLAN_IDS` is the space-separated list of plan IDs that completed in this wave.

   **If no plan in this wave used worktrees** (project-level `USE_WORKTREES=false` OR `WAVE_WORKTREE_PLANS` is empty): sequential agents already updated STATE.md and ROADMAP.md themselves — skip this step.

5.8. **Handle test gate failures (when `WAVE_FAILURE_COUNT > 0`):**

   ```
   ## ⚠ Post-Merge Test Failure (cumulative failures: ${WAVE_FAILURE_COUNT})

   Wave {N} worktrees merged successfully, but {M} tests fail after merge.
   This typically indicates conflicting changes across parallel plans
   (e.g., type definitions, shared imports, API contracts).

   Failed tests:
   {first 10 lines of failure output}

   Options:
   1. Fix now (recommended) — resolve conflicts before next wave
   2. Continue — failures may compound in subsequent waves
   ```

   Note: If `WAVE_FAILURE_COUNT > 1`, strongly recommend "Fix now" — compounding
   failures across multiple waves become exponentially harder to diagnose.

   If "Fix now": diagnose failures (typically import conflicts, missing types,
   or changed function signatures from parallel plans modifying the same module).
   Fix, commit as `fix: resolve post-merge conflicts from wave {N}`, re-run tests.

   **Why this matters:** Worktree isolation means each agent's Self-Check passes
   in isolation. But when merged, add/add conflicts in shared files (models, registries,
   CLI entry points) can silently drop code. The post-merge gate catches this before
   the next wave builds on a broken foundation.

6. **Report completion — spot-check claims first:**

   **Wave-close heartbeat (#2410):** after spot-checks finish (pass or fail),
   before the `## Wave {N} Complete` summary, emit as a literal line:

   ```
   [checkpoint] phase {PHASE_NUMBER} wave {N}/{M} complete, {P}/{Q} plans done ({wave_success}/{wave_plan_count} ok)
   ```

   For each SUMMARY.md:
   - Verify first 2 files from `key-files.created` exist on disk
   - Check `git log --oneline --all --grep="{phase}-{plan}"` returns ≥1 commit
   - Check for `## Self-Check: FAILED` marker

   If ANY spot-check fails: report which plan failed, route to failure handler — ask "Retry plan?" or "Continue with remaining waves?"

   If pass:
   ```
   ---
   ## Wave {N} Complete

   **{Plan ID}: {Plan Name}**
   {What was built — from SUMMARY.md}
   {Notable deviations, if any}

   {If more waves: what this enables for next wave}
   ---
   ```

7. **Handle failures:**
   **Step 7.0 — classify before branching (#3095):**
   ```bash
   CLASS_JSON=$(gsd-sdk query agent.classify-failure -- "$AGENT_RETURN_BODY")
   CLASS=$(echo "$CLASS_JSON" | jq -r '.class')
   SENTINEL=$(echo "$CLASS_JSON" | jq -r '.sentinel // empty')
   RETRY_AFTER=$(echo "$CLASS_JSON" | jq -r '.retryAfterSeconds // empty')
   if [ -n "$RETRY_AFTER" ]; then RETRY_HINT="  Provider hinted retry-after: ${RETRY_AFTER}s"; else RETRY_HINT=""; fi
   ```
   One classifier branch handles sentinels across Claude/Copilot/Codex/Gemini. Reference: `docs/research/provider-rate-limit-signals.md`.
   **Step 7.1 — `class == "quota-exceeded"`:**
   Do not offer "retry now". Run step-5 spot-check first; if SUMMARY.md is missing but commits exist, route to safe-resume (`state.verify-against-disk`) instead of immediate redispatch.
   ```text
   ⚠ Plan {plan_id} terminated by provider quota / rate limit
     Runtime sentinel: {SENTINEL}
     {RETRY_HINT}
     Partial commits on worktree branch: {N}
     SUMMARY.md present: {yes|no}
     1. Wait for quota reset, then resume (recommended)
   2. Switch to a different runtime / model and resume
   3. Abort phase and report partial state
   ```
   Re-run `/gsd:execute-phase` after quota reset for Option 1.
   **Step 7.2 — `class == "classify-handoff-bug"`:**
   If error contains `classifyHandoffIfNeeded is not defined`, treat as Claude runtime bug. Run the same step-5 spot-checks; PASS => treat as success, FAIL => fall through.
   **Step 7.3 — `class == "unknown-failure"`:**
   Report failed plan and ask Continue/Stop; continuing may cascade into dependent plan failures.

7b. **Pre-wave dependency check (waves 2+ only):**
    Before wave N+1, run `gsd-sdk query verify.key-links {phase_dir}/{plan}-PLAN.md` for each upcoming plan.
    If any PRIOR-wave artifact link fails, present:
    - `## Cross-Plan Wiring Gap` with plan/link/from/pattern rows
    - Options: investigate+fix before continue, or continue with cascade risk
    Skip key-links that reference files in the CURRENT (upcoming) wave.
8. **Execute checkpoint plans between waves** — see `<checkpoint_handling>`.
9. **Proceed to next wave.**
</step>
<step name="checkpoint_handling">
Plans with `autonomous: false` require user interaction.
**Auto-mode checkpoint handling:**
Read auto-advance config (chain flag OR user preference — same boolean as `check.auto-mode`):
```bash
AUTO_MODE=$(gsd-sdk query check auto-mode --pick active 2>/dev/null || echo "false")
```

When executor returns a checkpoint AND `AUTO_MODE` is `true`:
- **human-verify** → Auto-spawn continuation agent with `{user_response}` = `"approved"`. Log `⚡ Auto-approved checkpoint`.
- **decision** → Auto-spawn continuation agent with `{user_response}` = first option from checkpoint details. Log `⚡ Auto-selected: [option]`.
- **human-action** → Present to user (existing behavior below). Auth gates cannot be automated.

**Standard flow (not auto-mode, or human-action type):**

1. Spawn agent for checkpoint plan
2. Agent runs until checkpoint task or auth gate → returns structured state
3. Agent return includes: completed tasks table, current task + blocker, checkpoint type/details, what's awaited
4. **Present to user:**
   ```
   ## Checkpoint: [Type]

   **Plan:** 03-03 Dashboard Layout
   **Progress:** 2/3 tasks complete

   [Checkpoint Details from agent return]
   [Awaiting section from agent return]
   ```
5. User responds: "approved"/"done" | issue description | decision selection
6. **Spawn continuation agent (NOT resume)** using continuation-prompt.md template:
   - `{completed_tasks_table}`: From checkpoint return
   - `{resume_task_number}` + `{resume_task_name}`: Current task
   - `{user_response}`: What user provided
   - `{resume_instructions}`: Based on checkpoint type
7. Continuation agent verifies previous commits, continues from resume point
8. Repeat until plan completes or user stops

**Why fresh agent, not resume:** Resume relies on internal serialization that breaks with parallel tool calls. Fresh agents with explicit state are more reliable.

**Checkpoints in parallel waves:** Agent pauses and returns while other parallel agents may complete. Present checkpoint, spawn continuation, wait for all before next wave.
</step>

<step name="aggregate_results">
After all waves:

```markdown
## Phase {X}: {Name} Execution Complete

**Waves:** {N} | **Plans:** {M}/{total} complete

| Wave | Plans | Status |
|------|-------|--------|
| 1 | plan-01, plan-02 | ✓ Complete |
| CP | plan-03 | ✓ Verified |
| 2 | plan-04 | ✓ Complete |


Bash

cat "$HOME/.claude/get-shit-done/workflows/execute-phase.md" 2>/dev/null | sed -n '1100,1600p'

Read remainder of workflow


### Plan Details
1. **03-01**: [one-liner from SUMMARY.md]
2. **03-02**: [one-liner from SUMMARY.md]

### Issues Encountered
[Aggregate from SUMMARYs, or "None"]
```

**Security gate check:**
```bash
SECURITY_CFG=$(gsd-sdk query config-get workflow.security_enforcement --raw 2>/dev/null || echo "true")
SECURITY_FILE=$(ls "${PHASE_DIR}"/*-SECURITY.md 2>/dev/null | head -1)
```

If `SECURITY_CFG` is `false`: skip.

If `SECURITY_CFG` is `true` AND `SECURITY_FILE` is empty (no SECURITY.md yet):
Include in the next-steps routing output:
```
⚠ Security enforcement enabled — run before advancing:
  /gsd:secure-phase {PHASE} ${GSD_WS}
```

If `SECURITY_CFG` is `true` AND SECURITY.md exists: check frontmatter `threats_open`. If > 0:
```
⚠ Security gate: {threats_open} threats open
  /gsd:secure-phase {PHASE} — resolve before advancing
```
</step>

<step name="tdd_review_checkpoint">
**Optional step — TDD collaborative review.**

```bash
TDD_MODE=$(gsd-sdk query config-get workflow.tdd_mode 2>/dev/null || echo "false")
```

**Skip if `TDD_MODE` is `false`.**

When `TDD_MODE` is `true`, check whether any completed plans in this phase have `type: tdd` in their frontmatter:

```bash
TDD_PLANS=$(grep -rl "^type: tdd" "${PHASE_DIR}"/*-PLAN.md 2>/dev/null | wc -l | tr -d ' ')
```

**If `TDD_PLANS` > 0:** Insert end-of-phase collaborative review checkpoint.

1. Collect all SUMMARY.md files for TDD plans
2. For each TDD plan summary, verify the RED/GREEN/REFACTOR gate sequence:
   - RED gate: A failing test commit exists (`test(...)` commit with MUST-fail evidence)
   - GREEN gate: An implementation commit exists (`feat(...)` commit making tests pass)
   - REFACTOR gate: Optional cleanup commit (`refactor(...)` commit, tests still pass)
3. If any TDD plan is missing the RED or GREEN gate commits, flag it:
   ```
   ⚠ TDD gate violation: Plan {plan_id} missing {RED|GREEN} phase commit.
     Expected commit pattern: test({phase}-{plan}): ... → feat({phase}-{plan}): ...
   ```
4. Present collaborative review summary:
   ```
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━
    TDD REVIEW — Phase {X}
   ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━

   TDD Plans: {TDD_PLANS} | Gate violations: {count}

   | Plan | RED | GREEN | REFACTOR | Status |
   |------|-----|-------|----------|--------|
   | {id} |  ✓  |   ✓   |    ✓     | Pass   |
   | {id} |  ✓  |   ✗   |    —     | FAIL   |
   ```

**Escalation under MVP+TDD.** When `MVP_MODE=true` AND `TDD_MODE=true`, the review verdict escalates from advisory to **blocking**: missing RED or GREEN gate commits prevent marking the phase complete.
```text
Phase blocked: {N} TDD plan(s) violate the RED→GREEN gate sequence under MVP+TDD.
Resolve and re-run /gsd execute-phase, or override with
/gsd execute-phase {phase} --force-mvp-gate to ship anyway.
```
`--force-mvp-gate` is the escape hatch (documented, not yet implemented). Policy is:
- `MVP_MODE=true` AND `TDD_MODE=true`: violations are **blocking** unless explicitly overridden.
- otherwise: violations are advisory/non-blocking and are surfaced for review.
The verifier agent (step `verify_phase_goal`) still checks TDD discipline in both cases.
</step>

<step name="handle_partial_wave_execution">
If `WAVE_FILTER` was used, re-run plan discovery after execution:

```bash
POST_PLAN_INDEX=$(gsd-sdk query phase-plan-index "${PHASE_NUMBER}")
```

Apply the same "incomplete" filtering rules as earlier:
- ignore plans with `has_summary: true`
- if `--gaps-only`, only consider `gap_closure: true` plans

**If incomplete plans still remain anywhere in the phase:**
- STOP here
- Do NOT run phase verification
- Do NOT mark the phase complete in ROADMAP/STATE
- Present:

```markdown
## Wave {WAVE_FILTER} Complete

Selected wave finished successfully. This phase still has incomplete plans, so phase-level verification and completion were intentionally skipped.

/gsd:execute-phase {phase} ${GSD_WS}                # Continue remaining waves
/gsd:execute-phase {phase} --wave {next} ${GSD_WS}  # Run the next wave explicitly
```

**If no incomplete plans remain after the selected wave finishes:**
- continue with the normal phase-level verification and completion flow below
- this means the selected wave happened to be the last remaining work in the phase
</step>

<step name="code_review_gate" required="true">
**This step is REQUIRED and must not be skipped.** Auto-invoke code review on the phase's source changes. Advisory only — never blocks execution flow.

**Config gate:**
```bash
CODE_REVIEW_ENABLED=$(gsd-sdk query config-get workflow.code_review 2>/dev/null || echo "true")
```

If `CODE_REVIEW_ENABLED` is `"false"`: display "Code review skipped (workflow.code_review=false)" and proceed to next step.

**Invoke review:**
```
Skill(skill="gsd-code-review", args="${PHASE_NUMBER}")
```

**Check results using deterministic path (not glob):**
```bash
PADDED=$(printf "%02d" "${PHASE_NUMBER}")
REVIEW_FILE="${PHASE_DIR}/${PADDED}-REVIEW.md"
REVIEW_STATUS=$(sed -n '/^---$/,/^---$/p' "$REVIEW_FILE" | grep "^status:" | head -1 | cut -d: -f2 | tr -d ' ')
```

If REVIEW_STATUS is not "clean" and not "skipped" and not empty, display:
```
Code review found issues. Consider running:
/gsd:code-review ${PHASE_NUMBER} --fix
```

**Error handling:** If the Skill invocation fails or throws, catch the error, display "Code review encountered an error (non-blocking): {error}" and proceed to next step. Review failures must never block execution.

Regardless of review result, ALWAYS proceed to close_parent_artifacts → regression_gate → verify_phase_goal.
</step>

<step name="close_parent_artifacts">
**For decimal/polish phases only (X.Y pattern):** Close the feedback loop by resolving parent UAT and debug artifacts.

**Skip if** phase number has no decimal (e.g., `3`, `04`) — only applies to gap-closure phases like `4.1`, `03.1`.

**1. Detect decimal phase and derive parent:**
```bash
# Check if phase_number contains a decimal
if [[ "$PHASE_NUMBER" == *.* ]]; then
  PARENT_PHASE="${PHASE_NUMBER%%.*}"
fi
```

**2. Find parent UAT file:**
```bash
PARENT_INFO=$(gsd-sdk query find-phase "${PARENT_PHASE}" --raw)
# Extract directory from PARENT_INFO JSON, then find UAT file in that directory
```

**If no parent UAT found:** Skip this step (gap-closure may have been triggered by VERIFICATION.md instead).

**3. Update UAT gap statuses:**

Read the parent UAT file's `## Gaps` section. For each gap entry with `status: failed`:
- Update to `status: resolved`

**4. Update UAT frontmatter:**

If all gaps now have `status: resolved`:
- Update frontmatter `status: diagnosed` → `status: resolved`
- Update frontmatter `updated:` timestamp

**5. Resolve referenced debug sessions:**

For each gap that has a `debug_session:` field:
- Read the debug session file
- Update frontmatter `status:` → `resolved`
- Update frontmatter `updated:` timestamp
- Move to resolved directory:
```bash
mkdir -p .planning/debug/resolved
mv .planning/debug/{slug}.md .planning/debug/resolved/
```

**6. Commit updated artifacts:**
```bash
gsd-sdk query commit "docs(phase-${PARENT_PHASE}): resolve UAT gaps and debug sessions after ${PHASE_NUMBER} gap closure" --files .planning/phases/*${PARENT_PHASE}*/*-UAT.md .planning/debug/resolved/*.md
```
</step>

<step name="regression_gate">
Run prior phases' test suites to catch cross-phase regressions BEFORE verification.

**Skip if:** This is the first phase (no prior phases), or no prior VERIFICATION.md files exist.

**Step 1: Discover prior phases' test files**
```bash
# Find all VERIFICATION.md files from prior phases in current milestone
PRIOR_VERIFICATIONS=$(find .planning/phases/ -name "*-VERIFICATION.md" ! -path "*${PHASE_NUMBER}*" 2>/dev/null)
```

**Step 2: Extract test file lists from prior verifications**

For each VERIFICATION.md found, look for test file references:
- Lines containing `test`, `spec`, or `__tests__` paths
- The "Test Suite" or "Automated Checks" section
- File patterns from `key-files.created` in corresponding SUMMARY.md files that match `*.test.*` or `*.spec.*`

Collect all unique test file paths into `REGRESSION_FILES`.

**Step 3: Run regression tests (if any found)**

```bash
# Resolve test command: project config > Makefile > language sniff
REG_TEST_CMD=$(gsd-sdk query config-get workflow.test_command --default "" 2>/dev/null || true)
if [ -z "$REG_TEST_CMD" ]; then
  if [ -f "Makefile" ] && grep -q "^test:" Makefile; then
    REG_TEST_CMD="make test"
  elif [ -f "Justfile" ] || [ -f "justfile" ]; then
    REG_TEST_CMD="just test"
  elif [ -f "package.json" ]; then
    REG_TEST_CMD="npm test"
  elif [ -f "Cargo.toml" ]; then
    REG_TEST_CMD="cargo test"
  elif [ -f "go.mod" ]; then
    REG_TEST_CMD="go test ./..."
  elif [ -f "requirements.txt" ] || [ -f "pyproject.toml" ]; then
    REG_TEST_CMD="python -m pytest ${REGRESSION_FILES} -q --tb=short"
  else
    REG_TEST_CMD="true"
  fi
fi
# Detect test runner and run prior phase tests
eval "$REG_TEST_CMD" 2>&1
```

**Step 4: Report results**

If all tests pass:
```
✓ Regression gate: {N} prior-phase test files passed — no regressions detected
```
→ Proceed to verify_phase_goal

If any tests fail:
```
## ⚠ Cross-Phase Regression Detected

Phase {X} execution may have broken functionality from prior phases.

| Test File | Phase | Status | Detail |
|-----------|-------|--------|--------|
| {file} | {origin_phase} | FAILED | {first_failure_line} |

Options:
1. Fix regressions before verification (recommended)
2. Continue to verification anyway (regressions will compound)
3. Abort phase — roll back and re-plan
```

Use AskUserQuestion to present the options.
</step>

<step name="schema_drift_gate">
Post-execution schema drift detection. Catches false-positive verification where
build/types pass because TypeScript types come from config, not the live database.

**Run after execution completes but BEFORE verification marks success.**

```bash
SCHEMA_DRIFT=$(gsd-sdk query verify.schema-drift "${PHASE_NUMBER}" 2>/dev/null)
```

Parse JSON result for: `drift_detected`, `blocking`, `schema_files`, `orms`, `unpushed_orms`, `message`.

**If `drift_detected` is false:** Skip to verify_phase_goal.

**If `drift_detected` is true AND `blocking` is true:**

Check for override:
```bash
SKIP_SCHEMA=$(echo "${GSD_SKIP_SCHEMA_CHECK:-false}")
```

**If `SKIP_SCHEMA` is `true`:**

Display:
```
⚠ Schema drift detected but GSD_SKIP_SCHEMA_CHECK=true — bypassing gate.

Schema files changed: {schema_files}
ORMs requiring push: {unpushed_orms}

Proceeding to verification (database may be out of sync).
```
→ Continue to verify_phase_goal.

**If `SKIP_SCHEMA` is not `true`:**

BLOCK verification. Display:

```
## BLOCKED: Schema Drift Detected

Schema-relevant files changed during this phase but no database push command
was executed. Build and type checks pass because TypeScript types come from
config, not the live database — verification would produce a false positive.

Schema files changed: {schema_files}
ORMs requiring push: {unpushed_orms}

Required push commands:
{For each unpushed ORM, show the push command from the message}

Options:
1. Run push command now (recommended) — execute the push, then re-verify
2. Skip schema check (GSD_SKIP_SCHEMA_CHECK=true) — bypass this gate
3. Abort — stop execution and investigate
```

If `TEXT_MODE` is true, present as a plain-text numbered list. Otherwise use AskUserQuestion.

**If user selects option 1:** Present the specific push command(s) to run. After user confirms execution, re-run the schema drift check. If it passes, continue to verify_phase_goal.

**If user selects option 2:** Set override and continue to verify_phase_goal.

**If user selects option 3:** Stop execution. Report partial completion.
</step>

<step name="codebase_drift_gate">
Post-execution structural drift detection (#2003). Non-blocking by contract:
any internal error here MUST fall through to `verify_phase_goal`. The phase
is never failed by this gate.

Load and follow the full step spec from
`get-shit-done/workflows/execute-phase/steps/codebase-drift-gate.md` —
covers the SDK call, JSON contract, `warn` vs `auto-remap` branches, mapper
spawn template, and the two `workflow.drift_*` config keys.
</step>

<step name="verify_phase_goal">
Verify phase achieved its GOAL, not just completed tasks.

```bash
VERIFIER_SKILLS=$(gsd-sdk query agent-skills gsd-verifier)
```

```
Agent(
  description="Verify phase {phase_number} goal achievement",
  prompt="Verify phase {phase_number} goal achievement.
Phase directory: {phase_dir}
Phase goal: {goal from ROADMAP.md}
Phase requirement IDs: {phase_req_ids}
Check must_haves against actual codebase.
Cross-reference requirement IDs from PLAN frontmatter against REQUIREMENTS.md — every ID MUST be accounted for.
Create VERIFICATION.md.

<files_to_read>
Read these files before verification:
- {phase_dir}/*-PLAN.md (All plans — understand intent, check must_haves)
- {phase_dir}/*-SUMMARY.md (All summaries — cross-reference claimed vs actual)
- .planning/REQUIREMENTS.md (Requirement traceability)
${CONTEXT_WINDOW >= 500000 ? `- {phase_dir}/*-CONTEXT.md (User decisions — verify they were honored)
- {phase_dir}/*-RESEARCH.md (Known pitfalls — check for traps)
- Prior VERIFICATION.md files from earlier phases (regression check)
` : ''}
</files_to_read>

${VERIFIER_SKILLS}",
  subagent_type="gsd-verifier",
  model="{verifier_model}"
)
```

> **ORCHESTRATOR RULE — CODEX RUNTIME**: After calling Agent() above, stop working on this task immediately. Do not read more files, edit code, or run tests related to this task while the subagent is active. Wait for the subagent to return its result. This prevents duplicate work, conflicting edits, and wasted context. Only resume when the subagent result is available.

Read status:
```bash
grep "^status:" "$PHASE_DIR"/*-VERIFICATION.md | cut -d: -f2 | tr -d ' '
```

| Status | Action |
|--------|--------|
| `passed` | → update_roadmap |
| `human_needed` | Persist and present human testing items; keep phase pending until verification reruns as `passed` |
| `gaps_found` | Present gap summary, offer `/gsd:plan-phase {phase} --gaps ${GSD_WS}` |

**If human_needed:**

**Step A: Persist human verification items as UAT file.**

Create `{phase_dir}/{phase_num}-HUMAN-UAT.md` using UAT template format:

```markdown
---
status: partial
phase: {phase_num}-{phase_name}
source: [{phase_num}-VERIFICATION.md]
started: [now ISO]
updated: [now ISO]
---

## Current Test

[awaiting human testing]

## Tests

{For each human_verification item from VERIFICATION.md:}

### {N}. {item description}
expected: {expected behavior from VERIFICATION.md}
result: [pending]

## Summary

total: {count}
passed: 0
issues: 0
pending: {count}
skipped: 0
blocked: 0

## Gaps
```

Commit the file:
```bash
gsd-sdk query commit "test({phase_num}): persist human verification items as UAT" --files "{phase_dir}/{phase_num}-HUMAN-UAT.md"
```

**Step B: Present to user:**

```
## ✓ Phase {X}: {Name} — Human Verification Required

All automated checks passed. {N} items need human testing:

{From VERIFICATION.md human_verification section}

Items saved to `{phase_num}-HUMAN-UAT.md` — they will appear in `/gsd:progress` and `/gsd:audit-uat`.

"approved" → continue | Report issues → gap closure
```

**If user says "approved":** Proceed to `update_roadmap`. The HUMAN-UAT.md file persists with `status: partial` and will surface in future progress checks until the user runs `/gsd:verify-work` on it.

**If user reports issues:** Proceed to gap closure as currently implemented.

**If gaps_found:**
```
## ⚠ Phase {X}: {Name} — Gaps Found

**Score:** {N}/{M} must-haves verified
**Report:** {phase_dir}/{phase_num}-VERIFICATION.md

### What's Missing
{Gap summaries from VERIFICATION.md}

---
## ▶ Next Up — [${PROJECT_CODE}] ${PROJECT_TITLE}

`/clear` then:

`/gsd:plan-phase {X} --gaps ${GSD_WS}`

Also: `cat {phase_dir}/{phase_num}-VERIFICATION.md` — full report
Also: `/gsd:verify-work {X} ${GSD_WS}` — manual testing first
```

Gap closure cycle: `/gsd:plan-phase {X} --gaps ${GSD_WS}` reads VERIFICATION.md → creates gap plans with `gap_closure: true` → user runs `/gsd:execute-phase {X} --gaps-only ${GSD_WS}` → verifier re-runs.
</step>

<step name="update_roadmap">
**Mark phase complete and update all tracking files:**

```bash
COMPLETION=$(gsd-sdk query phase.complete "${PHASE_NUMBER}")
```

The CLI handles:
- Marking phase checkbox `[x]` with completion date
- Updating Progress table (Status → Complete, date)
- Updating plan count to final
- Advancing STATE.md to next phase
- Updating REQUIREMENTS.md traceability
- Scanning for verification debt (returns `warnings` array)

Extract from result: `next_phase`, `next_phase_name`, `is_last_phase`, `warnings`, `has_warnings`.

**If has_warnings is true:**
```


cat "$HOME/.claude/get-shit-done/workflows/execute-phase.md" 2>/dev/null | sed -n '1600,2100p'

Read final workflow portion


<owl_messages>
<owl_message from="todlando-psyche" priority="normal"><EVENT type="echo_commune" from="todlando-psyche" timestamp="2026-05-27T22:06:58-07:00" machine="HFENDULEAM" project="claude_skill_owl" branch="main" head_sha="c18e79d4d3f9ee2a24e7348cd9c6e3fa004d98bf" head_subject="docs(35.1): plans 01-04 + research open-questions resolved" note="Echo commune brief — auto-fired">&lt;live-context&gt;
&lt;/live-context&gt;
&lt;project-context&gt;
&lt;/project-context&gt;</EVENT></owl_message>
</owl_messages>


```
## Phase {X} marked complete with {N} warnings:

{list each warning}

These items are tracked and will appear in `/gsd:progress` and `/gsd:audit-uat`.
```

```bash
gsd-sdk query commit "docs(phase-{X}): complete phase execution" --files .planning/ROADMAP.md .planning/STATE.md .planning/REQUIREMENTS.md {phase_dir}/*-VERIFICATION.md
```
</step>

<step name="auto_copy_learnings">
**Auto-copy phase learnings to global store (when enabled).**

This step runs AFTER phase completion and SUMMARY.md is written. It copies any LEARNINGS.md
entries from the completed phase to the global learnings store at `~/.gsd/knowledge/`.

**Check config gate:**
```bash
GL_ENABLED=$(gsd-sdk query config-get features.global_learnings --raw 2>/dev/null || echo "false")
```

**If `GL_ENABLED` is not `true`:** Skip this step entirely (feature disabled by default).

**If enabled:**

1. Check if LEARNINGS.md exists in the phase directory (use the `phase_dir` value from init context)
2. If found, copy to global store:
```bash
gsd-sdk query learnings.copy 2>/dev/null || echo "⚠ Learnings copy failed — continuing"
```
Copy failure must NOT block phase completion.
</step>

<step name="close_phase_todos">
**Auto-close pending todos tagged for this phase (#2433).**

This step runs AFTER `update_roadmap` marks the phase complete. It moves any pending todos that carry `resolves_phase: <current-phase-number>` to the completed directory.

```bash
PHASE_NUM="${PHASE_NUMBER}"
PENDING_DIR=".planning/todos/pending"
COMPLETED_DIR=".planning/todos/completed"
mkdir -p "$COMPLETED_DIR"

CLOSED=()
for TODO_FILE in "$PENDING_DIR"/*.md; do
  [ -f "$TODO_FILE" ] || continue
  # Extract resolves_phase from YAML frontmatter (first --- block only)
  RP=$(awk '/^---/{c++;next} c==1 && /^resolves_phase:/{print $2;exit} c==2{exit}' "$TODO_FILE" 2>/dev/null || true)
  if [ "$RP" = "$PHASE_NUM" ] || [ "$RP" = "\"$PHASE_NUM\"" ]; then
    mv "$TODO_FILE" "$COMPLETED_DIR/"
    CLOSED+=("$(basename "$TODO_FILE")")
  fi
done

if [ ${#CLOSED[@]} -gt 0 ]; then
  gsd-sdk query commit "docs(phase-${PHASE_NUMBER}): auto-close ${#CLOSED[@]} todo(s) resolved by this phase" --files .planning/todos/completed/ .planning/STATE.md|| true
  echo "◆ Closed ${#CLOSED[@]} todo(s) resolved by Phase ${PHASE_NUMBER}:"
  for f in "${CLOSED[@]}"; do echo "  ✓ $f"; done
fi
```

**If no todos have `resolves_phase: <this-phase>`:** Skip silently — this step is always additive and never blocks phase completion.
</step>

<step name="update_project_md">
**Evolve PROJECT.md to reflect phase completion (prevents planning document drift — #956):**

PROJECT.md tracks validated requirements, decisions, and current state. Without this step,
PROJECT.md falls behind silently over multiple phases.

1. Read `.planning/PROJECT.md`
2. If the file exists and has a `## Validated Requirements` or `## Requirements` section:
   - Move any requirements validated by this phase from Active → Validated
   - Add a brief note: `Validated in Phase {X}: {Name}`
3. If the file has a `## Current State` or similar section:
   - Update it to reflect this phase's completion (e.g., "Phase {X} complete — {one-liner}")
4. Update the `Last updated:` footer to today's date
5. Commit the change:

```bash
gsd-sdk query commit "docs(phase-{X}): evolve PROJECT.md after phase completion" --files .planning/PROJECT.md
```

**Skip this step if** `.planning/PROJECT.md` does not exist.
</step>

<step name="offer_next">

**Exception:** If `gaps_found`, the `verify_phase_goal` step already presents the gap-closure path (`/gsd:plan-phase {X} --gaps`). No additional routing needed — skip auto-advance.

**No-transition check (spawned by auto-advance chain):**

Parse `--no-transition` flag from $ARGUMENTS.

**If `--no-transition` flag present:**

Execute-phase was spawned by plan-phase's auto-advance. Do NOT run transition.md.
After verification passes and roadmap is updated, return completion status to parent:

```
## PHASE COMPLETE

Phase: ${PHASE_NUMBER} - ${PHASE_NAME}
Plans: ${completed_count}/${total_count}
Verification: {Passed | Gaps Found}

[Include aggregate_results output]
```

STOP. Do not proceed to auto-advance or transition.

**If `--no-transition` flag is NOT present:**

**Auto-advance detection:**

1. Parse `--auto` flag from $ARGUMENTS
2. Read consolidated auto-mode (`active` = chain flag OR user preference; chain flag already synced in init step):
   ```bash
   AUTO_MODE=$(gsd-sdk query check auto-mode --pick active 2>/dev/null || echo "false")
   ```

**If `--auto` flag present OR `AUTO_MODE` is true (AND verification passed with no gaps):**

```
╔══════════════════════════════════════════╗
║  AUTO-ADVANCING → TRANSITION             ║
║  Phase {X} verified, continuing chain    ║
╚══════════════════════════════════════════╝
```

Execute the transition workflow inline (do NOT use Agent — orchestrator context is ~10-15%, transition needs phase completion data already in context):

Read and follow `$HOME/.claude/get-shit-done/workflows/transition.md`, passing through the `--auto` flag so it propagates to the next phase invocation.

**If neither `--auto` nor `AUTO_MODE` is true:**

**STOP. Do not auto-advance. Do not execute transition. Do not plan next phase. Present options to the user and wait.**

**IMPORTANT: There is NO `/gsd-transition` command. Never suggest it. The transition workflow is internal only.**

Check whether CONTEXT.md already exists for the next phase:

```bash
ls .planning/phases/*{next}*/{next}-CONTEXT.md 2>/dev/null || echo "no-context"
```

If CONTEXT.md does **not** exist for the next phase, present:

```
## ✓ Phase {X}: {Name} Complete

/gsd:progress ${GSD_WS} — see updated roadmap
/gsd:discuss-phase {next} ${GSD_WS} — start here: discuss next phase before planning  ← recommended
/gsd:plan-phase {next} ${GSD_WS} — plan next phase (skip discuss)
/gsd:execute-phase {next} ${GSD_WS} — execute next phase (skip discuss and plan)
```

If CONTEXT.md **exists** for the next phase, present:

```
## ✓ Phase {X}: {Name} Complete

/gsd:progress ${GSD_WS} — see updated roadmap
/gsd:plan-phase {next} ${GSD_WS} — start here: plan next phase (CONTEXT.md already present)  ← recommended
/gsd:discuss-phase {next} ${GSD_WS} — re-discuss next phase
/gsd:execute-phase {next} ${GSD_WS} — execute next phase (skip planning)
```

Only suggest the commands listed above. Do not invent or hallucinate command names.
</step>

</process>

<context_efficiency>
Orchestrator: ~10-15% context for 200k windows, can use more for 1M+ windows.
Subagents: fresh context each (200k-1M depending on model). No polling (Agent blocks). No context bleed.

For 1M+ context models, consider:
- Passing richer context (code snippets, dependency outputs) directly to executors instead of just file paths
- Running small phases (≤3 plans, no dependencies) inline without subagent spawning overhead
- Relaxing /clear recommendations — context rot onset is much further out with 5x window
</context_efficiency>

<failure_handling>
- **Quota / rate-limit (any runtime — #3095):** Agent return body contains a sentinel like `usage limit`, `rate limit`, `429`, `too many requests`, `RESOURCE_EXHAUSTED`, `usage_limit_reached`. Route via `gsd-sdk query agent.classify-failure` → `class: "quota-exceeded"`. Do not offer retry-now; the right action is wait-for-reset and resume.
- **classifyHandoffIfNeeded false failure:** Agent reports "failed" but error is `classifyHandoffIfNeeded is not defined` → Claude Code bug, not GSD. Spot-check (SUMMARY exists, commits present) → if pass, treat as success
- **Agent fails mid-plan:** Missing SUMMARY.md → report, ask user how to proceed
- **Dependency chain breaks:** Wave 1 fails → Wave 2 dependents likely fail → user chooses attempt or skip
- **All agents in wave fail:** Systemic issue → stop, report for investigation
- **Checkpoint unresolvable:** "Skip this plan?" or "Abort phase execution?" → record partial progress in STATE.md
</failure_handling>

<resumption>
Re-run `/gsd:execute-phase {phase}` → discover_plans finds completed SUMMARYs → skips them → resumes from first incomplete plan → continues wave execution.

STATE.md tracks: last completed plan, current wave, pending checkpoints.
</resumption>


gsd-sdk query init.execute-phase 35.1 2>&1 | head -200

Init execute-phase 35.1


Owl Skill (SPT — Spacetime / Sentience Pocket Transacter)


gsd-sdk query agent-skills gsd-executor 2>&1 | head -100

Get gsd-executor skills


gsd-sdk query config-get runtime --default claude 2>/dev/null; echo "---"; gsd-sdk query config-get workflow.use_worktrees 2>/dev/null; echo "---"; gsd-sdk query config-get workflow._auto_chain_active 2>/dev/null; echo "---"; gsd-sdk query check auto-mode --pick active 2>/dev/null; echo "---"; ls .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/ 2>&1

Read runtime/worktree/auto config


"claude"
---
false
---
false
---
true
---
35.1-01-PLAN.md
35.1-02-PLAN.md
35.1-03-PLAN.md
35.1-04-PLAN.md
35.1-CONTEXT.md
35.1-PATTERNS.md
35.1-RESEARCH.md
35.1-SEED.md


gsd-sdk query phase-plan-index 35.1 2>&1

Get plan index with waves


Eliminate the parse-failure-during-write race that triggers $OWL list orphan misclassification. Route all 8 production `fs::write(info_path, ...)` call sites through `owlery::atomic_write_string` (tmp + rename). Add a source-order test that mechanically enforces the conversion so a future regression cannot silently reintroduce non-atomic writes. This is Wave A (Fix 2c) and must land before Wave B (Fix 1 + Fix 3) so the race window is closed before the read-side classifier loses its (incorrect) self-healing behavior.

Add the two primitives Wave B (Plan 03) will consume:

Decouple cleanup from list (CQRS). Make `list_filter::collect()` strictly read-only: remove the `cleanup_orphans` parameter from the signature, delete the `fs::remove_dir_all` branch at `src/common/list_filter.rs:185`, add an `orphan_count: usize` field to `CollectedPerches`, and gate orphan classification on the new wrapper-alive + 60s grace primitives from Plan 02. Wire Plan 01's atomic writes are already landed (Wave A complete). Emit the orphan-count hint in `$OWL list` (NOT `$LIVE list`). Cover with tests: no-deletion-ever, hint emission, live-wrapper protection, grace gate.

Add the sole authorized orphan-dir GC surface: extend `$OWL doctor --fix` with a new `check_orphan_dirs(fix)` diagnostic that walks owlery Layer 1 + Layer 2 (nested), classifies each info.json-missing dir, and routes cleanup:


ls .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/.continue-here.md 2>/dev/null; echo "---intra-wave overlap---"; gsd-sdk query state.begin-phase --phase 35.1 --name "owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-" --plans 4 2>&1 | tail -5

Check for blockers + begin phase


---intra-wave overlap---
  ],
  "phase": "35.1",
  "phase_name": "owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-",
  "plan_count": 4
}


ToolSearch

Question: select:TaskCreate,TaskUpdate


Question: select:TaskCreate,TaskUpdate


TaskCreate

Wave 1: Plan 35.1-01 — atomic info.json writes

8 fs::write → owlery::atomic_write_string + source-order test


Task #1 created successfully: Wave 1: Plan 35.1-01 — atomic info.json writes


Wave 1: Plan 35.1-02 — is_wrapper_alive + grace const

Add wrapper-liveness + PHASE35_LIST_ORPHAN_GRACE_SECS=60 primitives in owlery


Task #2 created successfully: Wave 1: Plan 35.1-02 — is_wrapper_alive + grace const


Wave 2: Plan 35.1-03 — CQRS decouple + gates + hint

list_filter::collect() strict read-only, remove cleanup_orphans, orphan_count hint


Task #3 created successfully: Wave 2: Plan 35.1-03 — CQRS decouple + gates + hint


Wave 3: Plan 35.1-04 — doctor --fix orphan GC

check_orphan_dirs + soft-clean nested + doctor GC surface


Task #4 created successfully: Wave 3: Plan 35.1-04 — doctor --fix orphan GC


Phase 35.1 verification

verify_phase_goal + post-merge gate + roadmap close


Task #5 created successfully: Phase 35.1 verification

Phase 35.1 verification


## Execution Plan

**Phase 35.1: owl-list-data-loss-cqrs-decouple-orphan-detection-hardening** — 4 plans, 3 waves

| Wave | Plans | What |
|------|-------|------|
| 1 | 35.1-01, 35.1-02 | atomic info.json writes + wrapper-alive/grace primitives |
| 2 | 35.1-03 | CQRS decouple list_filter, orphan hint |
| 3 | 35.1-04 | doctor `--fix` orphan-dir GC |

Runtime: claude. Worktrees disabled (config) → sequential on main tree. No file overlap intra-wave. Auto-mode active but `--auto` flag absent → no auto-advance after phase. Stay on main (branching: none).

[checkpoint] phase 35.1 wave 1/3 starting, 2 plan(s), 0/4 plans done

---
## Wave 1

**35.1-01: Atomic info.json writes**
Route 8 production `fs::write(info_path, ...)` sites through `owlery::atomic_write_string` (tmp+rename). Adds source-order test to mechanically prevent regression. Closes the parse-failure-during-write race that triggers $OWL list orphan misclassification.

**35.1-02: wrapper-alive + grace primitives**
Adds `is_wrapper_alive(self_id)` helper + `PHASE35_LIST_ORPHAN_GRACE_SECS=60` const to `src/common/owlery.rs`. Consumed by Wave 2 plan 03.

Worktrees off → must serialize. Dispatching 35.1-01 first.

[checkpoint] phase 35.1 wave 1/3 plan 35.1-01 starting (0/4 plans done)


Updated task #1 status


Bash

git rev-parse HEAD; git rev-parse --abbrev-ref HEAD

Capture base HEAD/branch


c18e79d4d3f9ee2a24e7348cd9c6e3fa004d98bf
main


Agent

Execute plan 35.1-01

Prompt:
<objective>
Execute plan 35.1-01 of phase 35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-.
Commit each task atomically. Create SUMMARY.md.
Update STATE.md and ROADMAP.md after completion (sequential mode — main working tree).
</objective>

<sequential_execution>
You are running as a SEQUENTIAL executor agent on the main working tree (worktrees disabled).
Use normal git commits (with hooks). Do NOT use --no-verify.
REQUIRED ORDER: Write SUMMARY.md → commit → only then any narration. No text between Write and commit.
</sequential_execution>

<execution_context>
@$HOME/.claude/get-shit-done/workflows/execute-plan.md
@$HOME/.claude/get-shit-done/templates/summary.md
@$HOME/.claude/get-shit-done/references/checkpoints.md
@$HOME/.claude/get-shit-done/references/tdd.md
</execution_context>

<files_to_read>
Read these files at execution start using the Read tool:
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-01-PLAN.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-CONTEXT.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-RESEARCH.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-PATTERNS.md
- .planning/PROJECT.md
- .planning/STATE.md
- .planning/config.json
- ./CLAUDE.md
</files_to_read>

<success_criteria>
- [ ] All tasks in 35.1-01-PLAN.md executed
- [ ] Each task committed individually
- [ ] SUMMARY.md created at .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-01-SUMMARY.md
- [ ] STATE.md updated with position and decisions
- [ ] ROADMAP.md updated via `gsd-sdk query roadmap.update-plan-progress 35.1 35.1-01 complete`
</success_criteria>


<owl_reachability_notice>
You have an active owl perch. Launch this Agent with run_in_background: true so you stay reachable for incoming messages while it works.
</owl_reachability_notice>


Async agent launched successfully.
agentId: a3c951c1a5c8d2a8d (internal ID - do not mention to user. Use SendMessage with to: 'a3c951c1a5c8d2a8d' to continue this agent.)
The agent is working in the background. You will be notified automatically when it completes.
Do not duplicate this agent's work — avoid working with the same files or topics it is using. Work on non-overlapping tasks, or briefly tell the user what you launched and end your response.
output_file: C:\Users\decid\AppData\Local\Temp\claude\C--Users-decid-Documents-projects-claude-skill-owl\e2e4ae2f-6a38-4116-ba3d-f927a292441e\tasks\a3c951c1a5c8d2a8d.output
Do NOT Read or tail this file via the shell tool — it is the full sub-agent JSONL transcript and reading it will overflow your context. If the user asks for progress, say the agent is still running; you'll get a completion notification.

Execute plan 35.1-01

Prompt:
<objective>
Execute plan 35.1-01 of phase 35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-.
Commit each task atomically. Create SUMMARY.md.
Update STATE.md and ROADMAP.md after completion (sequential mode — main working tree).
</objective>

<sequential_execution>
You are running as a SEQUENTIAL executor agent on the main working tree (worktrees disabled).
Use normal git commits (with hooks). Do NOT use --no-verify.
REQUIRED ORDER: Write SUMMARY.md → commit → only then any narration. No text between Write and commit.
</sequential_execution>

<execution_context>
@$HOME/.claude/get-shit-done/workflows/execute-plan.md
@$HOME/.claude/get-shit-done/templates/summary.md
@$HOME/.claude/get-shit-done/references/checkpoints.md
@$HOME/.claude/get-shit-done/references/tdd.md
</execution_context>

<files_to_read>
Read these files at execution start using the Read tool:
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-01-PLAN.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-CONTEXT.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-RESEARCH.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-PATTERNS.md
- .planning/PROJECT.md
- .planning/STATE.md
- .planning/config.json
- ./CLAUDE.md
</files_to_read>

<success_criteria>
- [ ] All tasks in 35.1-01-PLAN.md executed
- [ ] Each task committed individually
- [ ] SUMMARY.md created at .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-01-SUMMARY.md
- [ ] STATE.md updated with position and decisions
- [ ] ROADMAP.md updated via `gsd-sdk query roadmap.update-plan-progress 35.1 35.1-01 complete`
</success_criteria>


Already used `run_in_background: true`. Agent dispatched for 35.1-01. Waiting for completion.


<task-notification>
<task-id>a3c951c1a5c8d2a8d</task-id>
<tool-use-id>toolu_01NwogN7NWCLzjnLTbu19Xvr</tool-use-id>
<output-file>C:\Users\decid\AppData\Local\Temp\claude\C--Users-decid-Documents-projects-claude-skill-owl\e2e4ae2f-6a38-4116-ba3d-f927a292441e\tasks\a3c951c1a5c8d2a8d.output</output-file>
<status>completed</status>
<summary>Agent "Execute plan 35.1-01" completed</summary>
<result>## PLAN COMPLETE

**Plan:** 35.1-01
**Tasks:** 2/2
**SUMMARY:** `C:\Users\decid\Documents\projects\claude_skill_owl\.planning\phases\35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-\35.1-01-SUMMARY.md`

**Commits:**
- `30a7fd7`: `fix(35.1-01): atomic info.json writes -- close $OWL list race window`
- `bf2d3e2`: `test(35.1-01): source-order test enforces atomic info.json writes`
- `3376ead`: `docs(35.1-01): complete atomic info.json writes plan`

**Duration:** ~6 min

**Key outcomes:**
- 8 production `fs::write(info_path, ...)` sites converted to `owlery::atomic_write_string` across 6 files (`src/owl/hook_subagent_start.rs:155`, `src/live/start.rs:328`, `src/owl/poll.rs:234+238`, `src/owl/ring.rs:66+204`, `src/common/hook_output.rs:190`, `src/common/listener.rs:206`).
- New regression guard `tests/source_order_atomic_info_writes.rs` mechanically asserts per-file occurrence counts and absence of pre-fix literals; manually verified to fail on single-site revert.
- All `#[cfg(test)]` sites left untouched per RESEARCH Pitfall 3.
- Pre-existing test issues (`tests/native_wrapper_state_retry.rs` build failure, parallel-test flakiness) confirmed by baseline reproduction — not caused by this plan.
- Wave A closes the parse-failure-during-write race; Wave B (Plans 02–04) is now safe to land.

**Files of interest:**
- `C:\Users\decid\Documents\projects\claude_skill_owl\src\common\owlery.rs` (canonical `atomic_write_string` at line 479 — unchanged)
- `C:\Users\decid\Documents\projects\claude_skill_owl\tests\source_order_atomic_info_writes.rs` (new regression guard)
- `C:\Users\decid\Documents\projects\claude_skill_owl\.planning\phases\35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-\35.1-01-SUMMARY.md`</result>
<usage><total_tokens>132260</total_tokens><tool_uses>70</tool_uses><duration_ms>621201</duration_ms></usage>
</task-notification>


CAVEMAN MODE ACTIVE (full). Drop articles/filler/pleasantries/hedging. Fragments OK. Code/commits/security: write normal.


<owl_messages>
<owl_message from="todlando-w106" priority="info">[WORKING_PERCH_NOTICE] Subagent working perch created.
Perch: todlando-w106
Agent type: gsd-executor
To message it: $OWL send todlando-w106 todlando</owl_message>
</owl_messages>

[OWL SYSTEM] Informational owl messages above — no acknowledgment needed. Continue your current task.

<owl_reachability_notice>
You have an active owl perch. When spawning subagents or doing work, use run_in_background: true so you stay reachable for incoming messages.
</owl_reachability_notice>


Bash

test -f .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-01-SUMMARY.md && echo "SUMMARY: OK" || echo "SUMMARY: MISSING"; git log --oneline --grep="35.1-01" | head -5

Spot-check 35.1-01


SUMMARY: OK
3376ead docs(35.1-01): complete atomic info.json writes plan
bf2d3e2 test(35.1-01): source-order test enforces atomic info.json writes
30a7fd7 fix(35.1-01): atomic info.json writes -- close $OWL list race window


Updated task #2 status


[checkpoint] phase 35.1 wave 1/3 plan 35.1-01 complete (1/4 plans done)
[checkpoint] phase 35.1 wave 1/3 plan 35.1-02 starting (1/4 plans done)


Agent

Execute plan 35.1-02

Prompt:
<objective>
Execute plan 35.1-02 of phase 35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-.
Commit each task atomically. Create SUMMARY.md.
Update STATE.md and ROADMAP.md after completion (sequential mode — main working tree).
</objective>

<sequential_execution>
You are running as a SEQUENTIAL executor agent on the main working tree (worktrees disabled).
Use normal git commits (with hooks). Do NOT use --no-verify.
REQUIRED ORDER: Write SUMMARY.md → commit → only then any narration. No text between Write and commit.
</sequential_execution>

<execution_context>
@$HOME/.claude/get-shit-done/workflows/execute-plan.md
@$HOME/.claude/get-shit-done/templates/summary.md
@$HOME/.claude/get-shit-done/references/checkpoints.md
@$HOME/.claude/get-shit-done/references/tdd.md
</execution_context>

<files_to_read>
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-02-PLAN.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-CONTEXT.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-RESEARCH.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-PATTERNS.md
- .planning/STATE.md
- .planning/config.json
- ./CLAUDE.md
</files_to_read>

<note>
Plan 02 adds new primitives (`is_wrapper_alive`, `PHASE35_LIST_ORPHAN_GRACE_SECS`) that are unused until Plan 03 lands. A dead-code warning before Wave 2 is expected per W3 plan-check warning — acceptable. Use `#[allow(dead_code)]` if the project treats warnings as errors.
</note>

<success_criteria>
- [ ] All tasks in 35.1-02-PLAN.md executed
- [ ] Each task committed individually
- [ ] SUMMARY.md created at .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-02-SUMMARY.md
- [ ] STATE.md updated
- [ ] ROADMAP.md updated via `gsd-sdk query roadmap.update-plan-progress 35.1 35.1-02 complete`
</success_criteria>


Async agent launched successfully.
agentId: af819e400bff1f310 (internal ID - do not mention to user. Use SendMessage with to: 'af819e400bff1f310' to continue this agent.)
The agent is working in the background. You will be notified automatically when it completes.
Do not duplicate this agent's work — avoid working with the same files or topics it is using. Work on non-overlapping tasks, or briefly tell the user what you launched and end your response.
output_file: C:\Users\decid\AppData\Local\Temp\claude\C--Users-decid-Documents-projects-claude-skill-owl\e2e4ae2f-6a38-4116-ba3d-f927a292441e\tasks\af819e400bff1f310.output
Do NOT Read or tail this file via the shell tool — it is the full sub-agent JSONL transcript and reading it will overflow your context. If the user asks for progress, say the agent is still running; you'll get a completion notification.

Execute plan 35.1-02

Prompt:
<objective>
Execute plan 35.1-02 of phase 35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-.
Commit each task atomically. Create SUMMARY.md.
Update STATE.md and ROADMAP.md after completion (sequential mode — main working tree).
</objective>

<sequential_execution>
You are running as a SEQUENTIAL executor agent on the main working tree (worktrees disabled).
Use normal git commits (with hooks). Do NOT use --no-verify.
REQUIRED ORDER: Write SUMMARY.md → commit → only then any narration. No text between Write and commit.
</sequential_execution>

<execution_context>
@$HOME/.claude/get-shit-done/workflows/execute-plan.md
@$HOME/.claude/get-shit-done/templates/summary.md
@$HOME/.claude/get-shit-done/references/checkpoints.md
@$HOME/.claude/get-shit-done/references/tdd.md
</execution_context>

<files_to_read>
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-02-PLAN.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-CONTEXT.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-RESEARCH.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-PATTERNS.md
- .planning/STATE.md
- .planning/config.json
- ./CLAUDE.md
</files_to_read>

<note>
Plan 02 adds new primitives (`is_wrapper_alive`, `PHASE35_LIST_ORPHAN_GRACE_SECS`) that are unused until Plan 03 lands. A dead-code warning before Wave 2 is expected per W3 plan-check warning — acceptable. Use `#[allow(dead_code)]` if the project treats warnings as errors.
</note>

<success_criteria>
- [ ] All tasks in 35.1-02-PLAN.md executed
- [ ] Each task committed individually
- [ ] SUMMARY.md created at .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-02-SUMMARY.md
- [ ] STATE.md updated
- [ ] ROADMAP.md updated via `gsd-sdk query roadmap.update-plan-progress 35.1 35.1-02 complete`
</success_criteria>


Already used `run_in_background: true`. Plan 35.1-02 dispatched. Waiting.


<task-notification>
<task-id>af819e400bff1f310</task-id>
<tool-use-id>toolu_01Hk7SaBdXiVeQi73cpTZUBc</tool-use-id>
<output-file>C:\Users\decid\AppData\Local\Temp\claude\C--Users-decid-Documents-projects-claude-skill-owl\e2e4ae2f-6a38-4116-ba3d-f927a292441e\tasks\af819e400bff1f310.output</output-file>
<status>completed</status>
<summary>Agent "Execute plan 35.1-02" completed</summary>
<result>## PLAN COMPLETE

**Plan:** 35.1-02
**Tasks:** 1/1
**SUMMARY:** `C:\Users\decid\Documents\projects\claude_skill_owl\.planning\phases\35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-\35.1-02-SUMMARY.md`

**Commits:**
- `80b2389` — feat(35.1-02): is_wrapper_alive + 60s list-orphan grace constant
- `0a9e008` — docs(35.1-02): complete Wave 1 — is_wrapper_alive + grace constant primitives

**Duration:** ~5min

**Key file:** `C:\Users\decid\Documents\projects\claude_skill_owl\src\common\owlery.rs`
- Line 755: `pub(crate) const PHASE35_LIST_ORPHAN_GRACE_SECS: u64 = 60;` (with `#[allow(dead_code)]`)
- Line 763: `pub(crate) fn is_wrapper_alive(self_id: &str) -> bool` (with `#[allow(dead_code)]`)
- 4 new unit tests in the `tests` module (all passing; `common::owlery` suite: 123/123)

**Notes:**
- Pure additions per plan intent. `PHASE25_SWEEP_GRACE_SECS = 30` at line 747 unchanged.
- `cargo build --release` exits 0 with no new warnings (existing 9 warnings are unrelated).
- Implemented the alive-PID test (not omitted) — existing `ENV_LOCK`/`EnvSnapshot`/`tempfile`/`SPT_HOME` scaffolding was reused.
- Two Rule 2 deviations: added a defensive third test for unparseable PID content, and a fourth test locking the `PHASE35 != PHASE25` constant-pair invariant.
- ROADMAP shows 35.1 at 2/4 plans complete, "In Progress". Plan 03 (Wave B) can now consume both primitives.</result>
<usage><total_tokens>74808</total_tokens><tool_uses>36</tool_uses><duration_ms>218199</duration_ms></usage>
</task-notification>


<owl_messages>
<owl_message from="todlando-w107" priority="info">[WORKING_PERCH_NOTICE] Subagent working perch created.
Perch: todlando-w107
Agent type: gsd-executor
To message it: $OWL send todlando-w107 todlando</owl_message>
</owl_messages>

[OWL SYSTEM] Informational owl messages above — no acknowledgment needed. Continue your current task.

<owl_reachability_notice>
You have an active owl perch. When spawning subagents or doing work, use run_in_background: true so you stay reachable for incoming messages.
</owl_reachability_notice>


Bash

test -f .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-02-SUMMARY.md && echo "SUMMARY: OK" || echo "SUMMARY: MISSING"; git log --oneline --grep="35.1-02" | head -5

Spot-check 35.1-02


SUMMARY: OK
0a9e008 docs(35.1-02): complete Wave 1 — is_wrapper_alive + grace constant primitives
80b2389 feat(35.1-02): is_wrapper_alive + 60s list-orphan grace constant


[checkpoint] phase 35.1 wave 1/3 plan 35.1-02 complete (2/4 plans done)

Post-merge gate: skip (sequential mode, no worktree merges). Quick build verify before Wave 2.


Post-Wave-1 build check


warning: function `route_two_slice` is never used
   --> src\owl\echo_commune.rs:722:15
    |
722 | pub(crate) fn route_two_slice(
    |               ^^^^^^^^^^^^^^^

warning: function `route_project_slot` is never used
   --> src\owl\echo_commune.rs:790:4
    |
790 | fn route_project_slot(
    |    ^^^^^^^^^^^^^^^^^^

warning: function `should_fire` is never used
   --> src\live\wrapper\echo_fire.rs:124:15
    |
124 | pub(crate) fn should_fire(sentinel: &Path, window: Duration) -> bool {
    |               ^^^^^^^^^^^

warning: `owl` (lib) generated 9 warnings (run `cargo fix --lib -p owl` to apply 2 suggestions)
    Finished `release` profile [optimized] target(s) in 0.09s


Build clean. 9 pre-existing warnings (unchanged). Wave 1 done.

[checkpoint] phase 35.1 wave 1/3 complete, 2/4 plans done (2/2 ok)

---
## Wave 2

**35.1-03: CQRS decouple + gates + hint**
Make `list_filter::collect()` strictly read-only. Remove `cleanup_orphans` param + `fs::remove_dir_all` branch at `src/common/list_filter.rs:185`. Add `orphan_count: usize` field. Gate orphan classification on Plan 02's `is_wrapper_alive` + 60s grace. Emit orphan-count hint in `$OWL list`. Tests cover no-deletion-ever, hint emission, live-wrapper protection, grace gate.

[checkpoint] phase 35.1 wave 2/3 starting, 1 plan(s), 2/4 plans done
[checkpoint] phase 35.1 wave 2/3 plan 35.1-03 starting (2/4 plans done)


Updated task #3 status


Agent

Execute plan 35.1-03

Prompt:
<objective>
Execute plan 35.1-03 of phase 35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-.
Commit each task atomically. Create SUMMARY.md.
Update STATE.md and ROADMAP.md after completion (sequential mode — main working tree).
</objective>

<sequential_execution>
You are running as a SEQUENTIAL executor agent on the main working tree (worktrees disabled).
Use normal git commits (with hooks). Do NOT use --no-verify.
REQUIRED ORDER: Write SUMMARY.md → commit → only then any narration. No text between Write and commit.
</sequential_execution>

<execution_context>
@$HOME/.claude/get-shit-done/workflows/execute-plan.md
@$HOME/.claude/get-shit-done/templates/summary.md
@$HOME/.claude/get-shit-done/references/checkpoints.md
@$HOME/.claude/get-shit-done/references/tdd.md
</execution_context>

<files_to_read>
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-03-PLAN.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-CONTEXT.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-RESEARCH.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-PATTERNS.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-01-SUMMARY.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-02-SUMMARY.md
- .planning/STATE.md
- .planning/config.json
- ./CLAUDE.md
</files_to_read>

<note>
Wave 1 complete:
- Plan 01: 8 fs::write sites converted to owlery::atomic_write_string + source-order test
- Plan 02: is_wrapper_alive(self_id) + PHASE35_LIST_ORPHAN_GRACE_SECS=60 at src/common/owlery.rs:755,763 (with #[allow(dead_code)])
This plan consumes both primitives. Remove the #[allow(dead_code)] attributes when wiring them.
Emit orphan-count hint in $OWL list ONLY (not $LIVE list) per CONTEXT.md.
</note>

<success_criteria>
- [ ] All tasks in 35.1-03-PLAN.md executed
- [ ] Each task committed individually
- [ ] SUMMARY.md created at .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-03-SUMMARY.md
- [ ] STATE.md updated
- [ ] ROADMAP.md updated via `gsd-sdk query roadmap.update-plan-progress 35.1 35.1-03 complete`
</success_criteria>


Async agent launched successfully.
agentId: aa9fd69be13f35c31 (internal ID - do not mention to user. Use SendMessage with to: 'aa9fd69be13f35c31' to continue this agent.)
The agent is working in the background. You will be notified automatically when it completes.
Do not duplicate this agent's work — avoid working with the same files or topics it is using. Work on non-overlapping tasks, or briefly tell the user what you launched and end your response.
output_file: C:\Users\decid\AppData\Local\Temp\claude\C--Users-decid-Documents-projects-claude-skill-owl\e2e4ae2f-6a38-4116-ba3d-f927a292441e\tasks\aa9fd69be13f35c31.output
Do NOT Read or tail this file via the shell tool — it is the full sub-agent JSONL transcript and reading it will overflow your context. If the user asks for progress, say the agent is still running; you'll get a completion notification.

Execute plan 35.1-03

Prompt:
<objective>
Execute plan 35.1-03 of phase 35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-.
Commit each task atomically. Create SUMMARY.md.
Update STATE.md and ROADMAP.md after completion (sequential mode — main working tree).
</objective>

<sequential_execution>
You are running as a SEQUENTIAL executor agent on the main working tree (worktrees disabled).
Use normal git commits (with hooks). Do NOT use --no-verify.
REQUIRED ORDER: Write SUMMARY.md → commit → only then any narration. No text between Write and commit.
</sequential_execution>

<execution_context>
@$HOME/.claude/get-shit-done/workflows/execute-plan.md
@$HOME/.claude/get-shit-done/templates/summary.md
@$HOME/.claude/get-shit-done/references/checkpoints.md
@$HOME/.claude/get-shit-done/references/tdd.md
</execution_context>

<files_to_read>
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-03-PLAN.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-CONTEXT.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-RESEARCH.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-PATTERNS.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-01-SUMMARY.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-02-SUMMARY.md
- .planning/STATE.md
- .planning/config.json
- ./CLAUDE.md
</files_to_read>

<note>
Wave 1 complete:
- Plan 01: 8 fs::write sites converted to owlery::atomic_write_string + source-order test
- Plan 02: is_wrapper_alive(self_id) + PHASE35_LIST_ORPHAN_GRACE_SECS=60 at src/common/owlery.rs:755,763 (with #[allow(dead_code)])
This plan consumes both primitives. Remove the #[allow(dead_code)] attributes when wiring them.
Emit orphan-count hint in $OWL list ONLY (not $LIVE list) per CONTEXT.md.
</note>

<success_criteria>
- [ ] All tasks in 35.1-03-PLAN.md executed
- [ ] Each task committed individually
- [ ] SUMMARY.md created at .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-03-SUMMARY.md
- [ ] STATE.md updated
- [ ] ROADMAP.md updated via `gsd-sdk query roadmap.update-plan-progress 35.1 35.1-03 complete`
</success_criteria>


Plan 35.1-03 dispatched (run_in_background: true). Waiting.


<task-notification>
<task-id>aa9fd69be13f35c31</task-id>
<tool-use-id>toolu_01WYy7eZpw3MwLifb6hVV25v</tool-use-id>
<output-file>C:\Users\decid\AppData\Local\Temp\claude\C--Users-decid-Documents-projects-claude-skill-owl\e2e4ae2f-6a38-4116-ba3d-f927a292441e\tasks\aa9fd69be13f35c31.output</output-file>
<status>completed</status>
<summary>Agent "Execute plan 35.1-03" completed</summary>
<result>## PLAN COMPLETE

**Plan:** 35.1-03
**Tasks:** 3/3
**SUMMARY:** `C:\Users\decid\Documents\projects\claude_skill_owl\.planning\phases\35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-\35.1-03-SUMMARY.md`

**Commits:**
- `f0f1224` — fix(35.1-03): CQRS-decouple $OWL list — read-only collect + orphan-count hint + wrapper/grace gates (Tasks 1+2)
- `530cfe0` — test(35.1-03): CQRS invariant + orphan-count hint + wrapper-alive + grace gates (Task 3)
- `bda4640` — docs(35.1-03): SUMMARY + STATE + ROADMAP

**Duration:** ~12 min

**Key outcomes:**
- `list_filter::collect()` is signature-pure read-only — `cleanup_orphans: bool` parameter removed entirely (LIST-NOMUT-01), `fs::remove_dir_all` + `CLEANED:<id>` branch deleted, `pub orphan_count: usize` field added to `CollectedPerches`.
- Wrapper-alive (Gate A) and 60s grace (Gate B) protect against false-positive orphan classification — wrapper-alive runs first to short-circuit psyche perches under concurrent info.json rewrite.
- `$OWL list` emits S_WARN hint `"(N orphan {directory|directories} present — run \`owl doctor --fix\` to GC)"` when `orphan_count > 0`; `$LIVE list` does NOT emit (owl-only surface per CONTEXT § Fix 1).
- 4 mandatory tests + 1 defense-in-depth — all passing (11/11 list_filter unit + 10/10 list_flags integration + 123/123 owlery unit).
- Test-only `PHASE35_LIST_ORPHAN_GRACE_OVERRIDE` thread-local + resolver mirrors the established `SWEEP_GRACE_OVERRIDE` pattern, lets unit tests collapse the gate without 60s sleeps.

**Files modified:**
- `C:\Users\decid\Documents\projects\claude_skill_owl\src\common\list_filter.rs`
- `C:\Users\decid\Documents\projects\claude_skill_owl\src\common\owlery.rs`
- `C:\Users\decid\Documents\projects\claude_skill_owl\src\owl\list.rs`
- `C:\Users\decid\Documents\projects\claude_skill_owl\src\live\list.rs`
- `C:\Users\decid\Documents\projects\claude_skill_owl\tests\list_flags.rs`

**Deviations documented:** 1 Rule-3 (test-only grace override for unit tests), 1 Rule-2 (live-list hint-exclusion defense-in-depth test), 1 non-deviation traceability note (pre-existing `fs::remove_file(&ready_path)` stale-online soft-clean retained — pre-dates Phase 35.1, removes only the `ready` sentinel from a confirmed-dead perch, functional invariant `no fs::remove_dir_all + no soft_stop_perch` fully satisfied). Full detail in SUMMARY.md § Deviations from Plan.</result>
<usage><total_tokens>174819</total_tokens><tool_uses>64</tool_uses><duration_ms>734323</duration_ms></usage>
</task-notification>


<owl_messages>
<owl_message from="todlando-w108" priority="info">[WORKING_PERCH_NOTICE] Subagent working perch created.
Perch: todlando-w108
Agent type: gsd-executor
To message it: $OWL send todlando-w108 todlando</owl_message>
</owl_messages>

[OWL SYSTEM] Informational owl messages above — no acknowledgment needed. Continue your current task.

<owl_reachability_notice>
You have an active owl perch. When spawning subagents or doing work, use run_in_background: true so you stay reachable for incoming messages.
</owl_reachability_notice>


Bash

test -f .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-03-SUMMARY.md && echo "SUMMARY: OK" || echo "SUMMARY: MISSING"; git log --oneline --grep="35.1-03" | head -5

Spot-check 35.1-03


SUMMARY: OK
bda4640 docs(35.1-03): complete CQRS-decouple plan -- SUMMARY + STATE + ROADMAP
530cfe0 test(35.1-03): CQRS invariant + orphan-count hint + wrapper-alive + grace gates
f0f1224 fix(35.1-03): CQRS-decouple $OWL list -- read-only collect + orphan-count hint + wrapper/grace gates


Updated task #4 status


[checkpoint] phase 35.1 wave 2/3 plan 35.1-03 complete (3/4 plans done)
[checkpoint] phase 35.1 wave 2/3 complete, 3/4 plans done (1/1 ok)

---
## Wave 3

**35.1-04: doctor --fix orphan GC**
Sole authorized orphan-dir GC surface. Extends `$OWL doctor --fix` with `check_orphan_dirs(fix)` — walks Layer 1 + Layer 2 (nested), classifies info.json-missing dirs, routes cleanup. Updates CLAUDE.md + AGENTS.md docs.

[checkpoint] phase 35.1 wave 3/3 starting, 1 plan(s), 3/4 plans done
[checkpoint] phase 35.1 wave 3/3 plan 35.1-04 starting (3/4 plans done)


Agent

Execute plan 35.1-04

Prompt:
<objective>
Execute plan 35.1-04 of phase 35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-.
Commit each task atomically. Create SUMMARY.md.
Update STATE.md and ROADMAP.md after completion (sequential mode — main working tree).
</objective>

<sequential_execution>
You are running as a SEQUENTIAL executor agent on the main working tree (worktrees disabled).
Use normal git commits (with hooks). Do NOT use --no-verify.
REQUIRED ORDER: Write SUMMARY.md → commit → only then any narration. No text between Write and commit.
</sequential_execution>

<execution_context>
@$HOME/.claude/get-shit-done/workflows/execute-plan.md
@$HOME/.claude/get-shit-done/templates/summary.md
@$HOME/.claude/get-shit-done/references/checkpoints.md
@$HOME/.claude/get-shit-done/references/tdd.md
</execution_context>

<files_to_read>
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-04-PLAN.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-CONTEXT.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-RESEARCH.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-PATTERNS.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-03-SUMMARY.md
- .planning/STATE.md
- .planning/config.json
- ./CLAUDE.md
</files_to_read>

<note>
Wave 1+2 complete. This is the sole authorized orphan-dir GC surface — `$OWL list` is now strictly read-only.
W2 plan-check warning: Plan 04 interface snippet had a return-type doc drift (non-functional). Follow PLAN.md as authoritative; if interface signature in plan body conflicts with the snippet, prefer the body.
</note>

<success_criteria>
- [ ] All tasks in 35.1-04-PLAN.md executed
- [ ] Each task committed individually
- [ ] SUMMARY.md created at .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-04-SUMMARY.md
- [ ] STATE.md updated
- [ ] ROADMAP.md updated via `gsd-sdk query roadmap.update-plan-progress 35.1 35.1-04 complete`
</success_criteria>


Async agent launched successfully.
agentId: a8a8ef771d9be4678 (internal ID - do not mention to user. Use SendMessage with to: 'a8a8ef771d9be4678' to continue this agent.)
The agent is working in the background. You will be notified automatically when it completes.
Do not duplicate this agent's work — avoid working with the same files or topics it is using. Work on non-overlapping tasks, or briefly tell the user what you launched and end your response.
output_file: C:\Users\decid\AppData\Local\Temp\claude\C--Users-decid-Documents-projects-claude-skill-owl\e2e4ae2f-6a38-4116-ba3d-f927a292441e\tasks\a8a8ef771d9be4678.output
Do NOT Read or tail this file via the shell tool — it is the full sub-agent JSONL transcript and reading it will overflow your context. If the user asks for progress, say the agent is still running; you'll get a completion notification.

Execute plan 35.1-04

Prompt:
<objective>
Execute plan 35.1-04 of phase 35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-.
Commit each task atomically. Create SUMMARY.md.
Update STATE.md and ROADMAP.md after completion (sequential mode — main working tree).
</objective>

<sequential_execution>
You are running as a SEQUENTIAL executor agent on the main working tree (worktrees disabled).
Use normal git commits (with hooks). Do NOT use --no-verify.
REQUIRED ORDER: Write SUMMARY.md → commit → only then any narration. No text between Write and commit.
</sequential_execution>

<execution_context>
@$HOME/.claude/get-shit-done/workflows/execute-plan.md
@$HOME/.claude/get-shit-done/templates/summary.md
@$HOME/.claude/get-shit-done/references/checkpoints.md
@$HOME/.claude/get-shit-done/references/tdd.md
</execution_context>

<files_to_read>
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-04-PLAN.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-CONTEXT.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-RESEARCH.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-PATTERNS.md
- .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-03-SUMMARY.md
- .planning/STATE.md
- .planning/config.json
- ./CLAUDE.md
</files_to_read>

<note>
Wave 1+2 complete. This is the sole authorized orphan-dir GC surface — `$OWL list` is now strictly read-only.
W2 plan-check warning: Plan 04 interface snippet had a return-type doc drift (non-functional). Follow PLAN.md as authoritative; if interface signature in plan body conflicts with the snippet, prefer the body.
</note>

<success_criteria>
- [ ] All tasks in 35.1-04-PLAN.md executed
- [ ] Each task committed individually
- [ ] SUMMARY.md created at .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-04-SUMMARY.md
- [ ] STATE.md updated
- [ ] ROADMAP.md updated via `gsd-sdk query roadmap.update-plan-progress 35.1 35.1-04 complete`
</success_criteria>


Already used `run_in_background: true`. Plan 35.1-04 dispatched. Waiting.


<task-notification>
<task-id>a8a8ef771d9be4678</task-id>
<tool-use-id>toolu_01MgMkqEmZCAGbQHsCs22Tk3</tool-use-id>
<output-file>C:\Users\decid\AppData\Local\Temp\claude\C--Users-decid-Documents-projects-claude-skill-owl\e2e4ae2f-6a38-4116-ba3d-f927a292441e\tasks\a8a8ef771d9be4678.output</output-file>
<status>completed</status>
<summary>Agent "Execute plan 35.1-04" completed</summary>
<result>## PLAN COMPLETE

**Plan:** 35.1-04
**Tasks:** 3/3
**SUMMARY:** `C:\Users\decid\Documents\projects\claude_skill_owl\.planning\phases\35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-\35.1-04-SUMMARY.md`

**Commits:**
- `8f1a687`: feat(35.1-04): add check_orphan_dirs(fix) to $OWL doctor
- `d4c9dbe`: test(35.1-04): integration tests for $OWL doctor --fix orphan-dir GC
- `cc0a898`: docs(35.1-04): add SOFT-CLEANED:id to status-tag inventory
- `c17b2f7`: docs(35.1-04): complete orphan-dir GC plan (SUMMARY + STATE + ROADMAP)

**Duration:** ~16 minutes (957s)

**Key files:**
- Created: `C:\Users\decid\Documents\projects\claude_skill_owl\tests\doctor_orphan_fix.rs`
- Modified: `C:\Users\decid\Documents\projects\claude_skill_owl\src\owl\doctor.rs`, `C:\Users\decid\Documents\projects\claude_skill_owl\CLAUDE.md`, `C:\Users\decid\Documents\projects\claude_skill_owl\AGENTS.md`, `C:\Users\decid\Documents\projects\claude_skill_owl\Cargo.toml`, `C:\Users\decid\Documents\projects\claude_skill_owl\Cargo.lock`

**Deviations:**
- Rule 1: Added SAFETY GUARD in `check_orphan_dirs` to refuse hard-deleting Layer-1 dirs with non-empty `nested/` subtrees (would cascade-wipe live nested perches — exactly the data-loss class Phase 35.1 eliminates).
- Rule 3: Switched Gate B to `owlery::phase35_list_orphan_grace_secs()` resolver (Plan 03's test-aware path) instead of the raw const.
- Rule 3: Added `libc` (Unix) + `windows-sys` (Windows) as `[target.'cfg(*)'.dev-dependencies]` for cross-platform directory mtime backdating in tests — avoids 60s `thread::sleep` and avoids adding `filetime` as a runtime dep.

**Verification:** All 3 new integration tests pass (`doctor_fix_classifies_orphans_correctly`, `doctor_dry_run_lists_orphans_without_deleting`, `doctor_fix_respects_live_wrapper`); 35 doctor lib tests pass; 10 list_flags integration tests pass; release build clean; Plan 03 CQRS invariant preserved (`fs::remove_dir_all` returns 0 matches in `src/common/list_filter.rs`).

**Phase 35.1 closure:** ROADMAP marks Phase 35.1 as Complete (4/4 plans, 4/4 summaries). Last plan of the phase — STATE reports `status: ready_for_verification`. `$OWL list` is now structurally incapable of deleting state under any code path; `$OWL doctor --fix` is the sole authorized orphan-dir GC surface with cascade-safe routing.</result>
<usage><total_tokens>199121</total_tokens><tool_uses>128</tool_uses><duration_ms>1229149</duration_ms></usage>
</task-notification>


<owl_messages>
<owl_message from="todlando-w109" priority="info">[WORKING_PERCH_NOTICE] Subagent working perch created.
Perch: todlando-w109
Agent type: gsd-executor
To message it: $OWL send todlando-w109 todlando</owl_message>
</owl_messages>

[OWL SYSTEM] Informational owl messages above — no acknowledgment needed. Continue your current task.

<owl_reachability_notice>
You have an active owl perch. When spawning subagents or doing work, use run_in_background: true so you stay reachable for incoming messages.
</owl_reachability_notice>


Bash

test -f .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/35.1-04-SUMMARY.md && echo "SUMMARY: OK" || echo "SUMMARY: MISSING"; git log --oneline --grep="35.1-04" | head -5; echo "---"; git log --oneline -20

Spot-check 35.1-04


SUMMARY: OK
c17b2f7 docs(35.1-04): complete orphan-dir GC plan
cc0a898 docs(35.1-04): add SOFT-CLEANED:id to status-tag inventory
d4c9dbe test(35.1-04): integration tests for $OWL doctor --fix orphan-dir GC
8f1a687 feat(35.1-04): add check_orphan_dirs(fix) to $OWL doctor
---
c17b2f7 docs(35.1-04): complete orphan-dir GC plan
cc0a898 docs(35.1-04): add SOFT-CLEANED:id to status-tag inventory
d4c9dbe test(35.1-04): integration tests for $OWL doctor --fix orphan-dir GC
8f1a687 feat(35.1-04): add check_orphan_dirs(fix) to $OWL doctor
bda4640 docs(35.1-03): complete CQRS-decouple plan -- SUMMARY + STATE + ROADMAP
530cfe0 test(35.1-03): CQRS invariant + orphan-count hint + wrapper-alive + grace gates
f0f1224 fix(35.1-03): CQRS-decouple $OWL list -- read-only collect + orphan-count hint + wrapper/grace gates
0a9e008 docs(35.1-02): complete Wave 1 — is_wrapper_alive + grace constant primitives
80b2389 feat(35.1-02): is_wrapper_alive + 60s list-orphan grace constant
3376ead docs(35.1-01): complete atomic info.json writes plan
bf2d3e2 test(35.1-01): source-order test enforces atomic info.json writes
30a7fd7 fix(35.1-01): atomic info.json writes -- close $OWL list race window
c18e79d docs(35.1): plans 01-04 + research open-questions resolved
f6e7665 docs(35.1): pattern map — 12/12 analogs identified
8026cd4 docs(35.1): research — bug surface located, primitives inventoried
dd78137 docs(35.1): add context locking GC surface + 3-fix ordering
7e3996d chore: bump spt plugin to v1.11.20
454b142 docs(34): fill v1.11.20 CHANGELOG entry — p-branch commit fix
84d85f7 docs(quick-260527-s8l): p-branch commit fix + debug session
2eb23eb fix(s8l): add salvage path to ensure_worktree for pre-populated targets


[checkpoint] phase 35.1 wave 3/3 plan 35.1-04 complete (4/4 plans done)
[checkpoint] phase 35.1 wave 3/3 complete, 4/4 plans done (1/1 ok)

## Phase 35.1 Execution Complete

**Waves:** 3 | **Plans:** 4/4 complete

| Wave | Plans | Status |
|------|-------|--------|
| 1 | 35.1-01, 35.1-02 | ✓ Complete |
| 2 | 35.1-03 | ✓ Complete |
| 3 | 35.1-04 | ✓ Complete |

### Plan Details
1. **35.1-01**: 8 `fs::write(info_path)` → `atomic_write_string` + source-order regression test
2. **35.1-02**: `is_wrapper_alive(self_id)` + `PHASE35_LIST_ORPHAN_GRACE_SECS=60` primitives
3. **35.1-03**: `list_filter::collect()` strict read-only, orphan-count hint in `$OWL list`, wrapper-alive + grace gates
4. **35.1-04**: `$OWL doctor --fix` orphan-dir GC (Layer 1 + Layer 2), cascade-safe routing

Now: regression gate → code review → schema/drift gates → phase verification.


gsd-sdk query config-get workflow.code_review 2>/dev/null; echo "---security---"; gsd-sdk query config-get workflow.security_enforcement --raw 2>/dev/null; echo "---tdd---"; gsd-sdk query config-get workflow.tdd_mode 2>/dev/null

Gate config flags


Exit code 1
---security---
---tdd---

Error: Exit code 1
---security---
---tdd---


cat .planning/config.json 2>/dev/null | head -40

Read config


Security gate check, then code review (required advisory step).


ls .planning/phases/35.1-owl-list-data-loss-cqrs-decouple-orphan-detection-hardening-/*-SECURITY.md 2>/dev/null || echo "no SECURITY.md"

Check security file


no SECURITY.md


Updated task #5 status


Launching skill: gsd-code-review


Base directory for this skill: C:\Users\decid\.claude\skills\gsd-code-review

<objective>
Review source files changed during a phase for bugs, security vulnerabilities, and code quality problems.

Spawns the gsd-code-reviewer agent to analyze code at the specified depth level. Produces REVIEW.md artifact in the phase directory with severity-classified findings.

Arguments:
- Phase number (required) — which phase's changes to review (e.g., "2" or "02")
- `--depth=quick|standard|deep` (optional) — review depth level, overrides workflow.code_review_depth config
  - quick: Pattern-matching only (~2 min)
  - standard: Per-file analysis with language-specific checks (~5-15 min, default)
  - deep: Cross-file analysis including import graphs and call chains (~15-30 min)
- `--files file1,file2,...` (optional) — explicit comma-separated file list, skips SUMMARY/git scoping (highest precedence for scoping)
- `--fix` (optional) — after review completes (or if REVIEW.md already exists), auto-apply fixes found. Spawns gsd-code-fixer agent. Accepts sub-flags:
  - `--all` — include Info findings in fix scope (default: Critical + Warning only)
  - `--auto` — enable fix + re-review iteration loop, capped at 3 iterations

Output: {padded_phase}-REVIEW.md in phase directory + inline summary of findings
</objective>

<execution_context>
@$HOME/.claude/get-shit-done/workflows/code-review.md
</execution_context>

<context>
Phase: 35.1 (first positional argument is phase number)

Optional flags parsed from 35.1:
- `--depth=VALUE` — Depth override (quick|standard|deep). If provided, overrides workflow.code_review_depth config.
- `--files=file1,file2,...` — Explicit file list override. Has highest precedence for file scoping per D-08. When provided, workflow skips SUMMARY.md extraction and git diff fallback entirely.

Context files (CLAUDE.md, SUMMARY.md, phase state) are resolved inside the workflow via `gsd-sdk query init.phase-op` and delegated to agent via `<files_to_read>` blocks.
</context>

<process>
This command is a thin dispatch layer. It parses arguments and delegates to the workflow.

Execute end-to-end.

The workflow (not this command) enforces these gates:
- Phase validation (before config gate)
- Config gate check (workflow.code_review)
- File scoping (--files override > SUMMARY.md > git diff fallback)
- Empty scope check (skip if no files)
- Agent spawning (gsd-code-reviewer)
- Result presentation (inline summary + next steps)
</process>


cat "$HOME/.claude/get-shit-done/workflows/code-review.md" 2>/dev/null | head -200

Read code-review workflow